Package: LAGOSNE 2.0.3

Jemma Stachelek

LAGOSNE: Interface to the Lake Multi-Scaled Geospatial and Temporal Database

Client for programmatic access to the Lake Multi-scaled Geospatial and Temporal database <https://lagoslakes.org>, with functions for accessing lake water quality and ecological context data for the US.

Authors:Jemma Stachelek [aut, cre], Samantha Oliver [aut], Farzan Masrour [aut]

LAGOSNE_2.0.3.tar.gz
LAGOSNE_2.0.3.zip(r-4.5)LAGOSNE_2.0.3.zip(r-4.4)LAGOSNE_2.0.3.zip(r-4.3)
LAGOSNE_2.0.3.tgz(r-4.4-any)LAGOSNE_2.0.3.tgz(r-4.3-any)
LAGOSNE_2.0.3.tar.gz(r-4.5-noble)LAGOSNE_2.0.3.tar.gz(r-4.4-noble)
LAGOSNE_2.0.3.tgz(r-4.4-emscripten)LAGOSNE_2.0.3.tgz(r-4.3-emscripten)
LAGOSNE.pdf |LAGOSNE.html✨
LAGOSNE/json (API)
NEWS

# Install 'LAGOSNE' in R:

install.packages('LAGOSNE', repos = c('https://cont-limno.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cont-limno/lagosne/issues

On CRAN:

ecology geoscience limnology water-quality

14 exports 15 stars 6.77 score 54 dependencies 1 mentions 98 scripts 304 downloads

Last updated 1 years agofrom:11632995a0. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 15 2024
R-4.5-win	NOTE	Sep 15 2024
R-4.5-linux	NOTE	Sep 15 2024
R-4.4-win	NOTE	Sep 15 2024
R-4.4-mac	NOTE	Sep 15 2024
R-4.3-win	OK	Sep 15 2024
R-4.3-mac	OK	Sep 15 2024

Exports:coordinatize display_names lagos_get_collins_2017 lagos_get_oliver_2015 lagos_load_collins_2017 lagos_load_oliver_2015 lagos_path lagosne_compile lagosne_get lagosne_load lagosne_select lagosne_version lake_info query_lagos_names

Dependencies:askpass BH cachem class classInt cli cpp11 crayon curl DBI dplyr e1071 fansi fastmap generics glue hms httr jsonlite KernSmooth lazyeval lifecycle magrittr MASS memoise mime openssl pillar pkgconfig prettyunits progress proxy purrr qs R6 RApiSerialize rappdirs Rcpp RcppParallel rlang s2 sf stringfish stringi stringr sys tibble tidyr tidyselect units utf8 vctrs withr wk

The Structure of LAGOSNE

Rendered fromlagosne_structure.html.asisusingR.rsp::asison Sep 15 2024.

Last update: 2017-10-16
Started: 2017-10-16

Working with LAGOSNE

Rendered fromworking_with_lagosne.html.asisusingR.rsp::asison Sep 15 2024.

Last update: 2017-10-16
Started: 2017-10-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
R interface to the LAGOSNE lakes database	LAGOSNE-package LAGOSNE
Climate, Hydrology, Atmospheric, and Geologic (CHAG) Datasets	baseflow chag climate county.chag deposition edu.chag geology hu12.chag hu4.chag hu8.chag hydrology runoff state.chag
LAGOSNE Spatial Classifications Metadata	buffer100m buffer500m classification classifications county edu hu12 hu4 hu8 iws lakeareaha scales state
Connectivity Datasets	buffer500m.conn conn connectivity county.conn edu.conn hu12.conn hu4.conn hu8.conn iws.conn state.conn
Convert a LAGOSNE flat file into a spatial object	coordinatize
Convert table names for display	display_names
Epilimnion Water Quality Data	censorcode chla chlorophyll colora detectionlimit doc epi_nutr nitrogen nutrients phosphorus qualifiers secchi waterquality
Summarize all LAGOSNE flat files	info_table
Get LAGOSNE snapshot from Collins et al. 2017	lagos_get_collins_2017
Get depth data from Oliver et al. 2015	lagos_get_oliver_2015
Ingest LAGOSNE flat files	lagos_ingest
Load LAGOSNE snapshot from Collins et al. 2017.	lagos_load_collins_2017
Load depth data from Oliver et al. 2015.	lagos_load_oliver_2015
Return the cross-platform data path designated for LAGOSNE.	lagos_path
LAGOSNE sources	lagos.source lagos.source.programs lagos_source_program programs source.programs
Lake Geospatial Metadata	lagoslakes lakes.geo
Compile LAGOSNE data	lagosne_compile
Retrieve LAGOSNE flat files	lagosne_get
Load LAGOSNE data	lagosne_load
Select and filter LAGOSNE data	lagosne_select
Latest LAGOSNE version	lagosne_version
Get a summary of lake attribute information	lake_info
Metadata for Lakes with Water Quality	depth lakes_limno legacyid maxdepth meandepth
The spatial extent of LAGOSNE data	lg_extent
Load LAGOSNE data from disk	load_lagos_txt
Metadata for all lakes > 1ha	location locus
Land Use Land Cover (LULC) Data Frames	buffer100m.lulc buffer500m.lulc county.lulc edu.lulc hu12.lulc hu4.lulc hu8.lulc iws.lulc lulc nlcd state.lulc topography
Query column keywords	query_column_keywords
Query column names	query_column_names
Query LAGOSNE names	query_lagos_names